SubtiBank SubtiBank
ytcP [2017-12-15 10:21:31]
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ytcP [2017-12-15 10:21:31]

similar to ABC transporter (permease)
locus
BSU30170
pI
9.06
mw
31.54 kDa
protein length
286 aa Sequence Blast
gene length
858 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.1|Uptake of carbon sources]
  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin]
  • [category|SW 6|Groups of genes] → [category|SW 6.11|Efp-dependent proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,087,321 → 3,088,181

    The protein

    Protein family

  • CysTW subfamily (according to Swiss-Prot)

    • Structure

  • [PDB|4TQU] (from Sphingomonas sp., 36% identity) [pubmed|26235029]

    • [SW|Localization]

  • cell membrane [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]-[gene|2D46E89AF6157B49BD443F47DB4A7258F22E8A24|ytcQ]
    description
    [Pubmed|22383849]
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    additional information

  • translation is likely to require [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] due to the presence of several consecutive proline residues [PubMed|23239624,23239623]

    • Biological materials

    Mutant

  • MGNA-B536 (ytcP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1535 NBRP B. subtilis, Japan]
  • BKE30170 (Δ[gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAGTGAATGTGCGATAGCTC, downstream forward: _UP4_TAAAGAAATATGAAACGGAG
  • BKK30170 (Δ[gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAGTGAATGTGCGATAGCTC, downstream forward: _UP4_TAAAGAAATATGAAACGGAG

    • References

  • 10092453,22383849,26235029